Objective To discuss the feasibility of constructing a 3D finite element model of the temporomandibular joint (TMJ) including the musculoskeletal system based on imaging and anatomy, and to provide new ideas of modeling for TMJ biomechanical researches. Methods CT images of the skull, MRI images of masticatory muscles and bilateral TMJ from No.23 Chinese virtual human in the second generation were collected and imported in batches into Mimics in format of DICOM for 3D reconstruction. Then the model was integrated and optimized by Geomagic Studio, and the TMJ capsule and articular cartilage were also constructed. After the material properties of TMJ tissues were defined, a 3D finite element model of TMJ including the musculoskeletal system was finally constructed by ANSYS. Results The 3D finite element model of TMJ with the musculoskeletal system was constructed, including TMJ disc, articular cartilage, TMJ capsule, maxilla (including zygoma and nasal), mandible, sphenoid, temporal bones (including part of parietal), maxillary teeth, mandibular teeth, temporalis muscles, masseter muscles, medial/lateral pterygoid muscles, temporomandibular ligaments, sphenomandibular ligaments and sylomandibular ligaments. Conclusions Based on CT and MRI images and anatomy, the 3D finite element model of TMJ including the musculoskeletal system can be precisely and feasibly constructed by Mimics, Geomagic Studio and ANSYS. This model can restore the biomechanical environment of the TMJ, provide new ideas of modeling for biomechanical researches on the TMJ, and offer the simulation platform for visualization treatment of TMJ disease in clinic.